Web-Based Tools for NGS Analysis (4)
GalaxyUSCSGenome Workbench of NCBIVEP at Ensembl
Next-Generation Sequencing (NGS) has revolutionized the field of genomics, providing scientists with unprecedented amounts of genomic data at a much lower cost and in a shorter timeframe. In order to handle the large amounts of data generated by NGS, various web-based tools have been developed for NGS analysis. Here are four popular web-based tools for NGS analysis:
1. Galaxy: Galaxy is an open-source web-based platform that allows users to easily access and analyze large amounts of genomic data. It provides a user-friendly, drag-and-drop interface that allows users to easily upload data from various NGS platforms, perform quality control, align reads, call variants, and perform downstream analysis, including functional annotation and pathway analysis.
2. BaseSpace: BaseSpace is a cloud-based platform developed by Illumina, a leading provider of NGS instruments. BaseSpace allows users to upload, store, and analyze genomic data generated by Illumina instruments. It provides a suite of analysis tools, including quality control, clustering, differential gene expression, and functional annotation.
3. DNAnexus: DNAnexus is a cloud-based platform that allows users to upload, store, and analyze genomic data from various NGS platforms. It provides a suite of analysis tools for quality control, alignment, variant calling, and downstream analysis, including differential gene expression, pathway analysis, and functional annotation.
4. Cytoscape: Cytoscape is an open-source platform for network analysis and visualization. It allows users to analyze and visualize complex genomic data sets, including gene expression, protein-protein interactions, and regulatory networks. It provides a suite of analysis tools, including clustering, functional annotation, and pathway analysis. Cytoscape also allows users to develop and share plugins to extend its functionality.
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