Is there a binding affinity metric for interactions not in equilibria?
Yes, there is a binding affinity metric for interactions that are not in equilibrium. This metric is called the dissociation constant (Kd). The dissociation constant quantifies the affinity between molecules in a non-equilibrium interaction, such as a ligand binding to a receptor or an enzyme binding to a substrate.
The dissociation constant measures the tendency of a complex (formed by the interaction of two or more molecules) to dissociate into its individual components. It is defined as the ratio of the rate of dissociation (koff) to the rate of association (kon)
Mathematically, the dissociation constant (Kd) can be expressed as:
Kd = koff / kon
A lower dissociation constant indicates a higher affinity between the interacting molecules, as it indicates a higher rate of association compared to the rate of dissociation. Conversely, a higher dissociation constant implies a lower affinity
The dissociation constant is expressed in units of concentration, such as molarity (M) or nanomolar (nM). It provides a quantitative measure of how tightly and specifically a ligand or substrate binds to its target molecule. A lower value of Kd suggests a stronger interaction, while a higher value indicates weaker binding
Experimental methods such as isothermal titration calorimetry (ITC) and surface plasmon resonance (SPR) are commonly used to determine the dissociation constant. These techniques can measure the rate of association and dissociation between molecules and provide valuable insight into the strength of their interactions
In summary, the dissociation constant (Kd) is a binding affinity metric used to quantify the strength of non-equilibrium interactions between molecules. It provides a quantitative measure of how tightly or loosely molecules interact, with lower Kd values representing stronger binding and higher Kd values indicating weaker binding
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